Lecture

Lecture 9 - Mendelian Randomization

2022-04-25 Haky Im
𝕙ttps://docs.google.com/presentation/d/16aMKkcAX1QifQabgBSBR_xr8LuoLwnsj9eEBFXi6EYk/edit?usp=sharing […] See slides Read more →

Lecture 8 - Functional Genomics to Inform GWAS

2022-04-20 Haky Im
𝕙ttps://docs.google.com/presentation/d/1fXQYo1sXa_FkiisLrd5CjusMkL_42XTG/edit?usp=sharing&ouid=100565019341850449624&rtpof=true&sd=true […] See slides Read more →

Lecture 7 - Predicting Complex Diseases - PRS

2022-04-18 Haky Im
𝕙ttps://docs.google.com/presentation/d/11oe2nZIFqs9TOXT_QDqdpsFhZYJeVVLm/edit?usp=sharing&ouid=100565019341850449624&rtpof=true&sd=true […] See slides Read more →

Lecture 6 - mixed effects - LDSC

2022-04-13 Haky Im
𝕙ttps://docs.google.com/presentation/d/1I0-4u_6PAG5Q9LNi3mfQNnvZsVgf16tO/edit?usp=sharing&ouid=100565019341850449624&rtpof=true&sd=true Read more →

Lecture 5 - Population Structure - PCA

2022-04-11 Haky Im
𝕙ttps://docs.google.com/presentation/d/1VYfx0coU5HKQLXwbo5yr7XvgJeqt8Hdf/edit?usp=sharing&ouid=100565019341850449624&rtpof=true&sd=true Read more →

Lecture 4 - Multiple Testing

2022-04-06 Haky Im
𝔽ind the slides here […] See the vignette here […] Storey, John D., and Robert Tibshirani. 2003. “Statistical Significance for Genomewide Studies.” Proceedings of the National Academy of Sciences 100 (16): 9440–45. Read more →

Lecture 3 - GWAS cancer risk, QC, UKBiobank

2022-04-04 Haky Im
𝔻ownload powerpoint from here https://uchicago.box.com/s/hwktymdc2nxlcpqik7alk9m6tsypd3c4 […] Sud, A., Kinnersley, B. & Houlston, R. Genome-wide association studies of cancer: current insights and future perspectives. Nat Rev Cancer 17, 692–704 (2017). https://doi.org/10.1038/nrc.2017.82 … Read more →

Lecture 2 - GWAS of Cancer Risk

2022-03-30 Haky Im
𝕊ud et al (see reference section). This review covers most of the concepts we want to cover in this class. We will learn by doing and unpack many of the concepts mentioned in the review. Hopefully, you will re-read the paper at the end of the class and realize how much you have learned. […] … Read more →

Lecture 9

2021-04-26 Haky Im
𝕋he slides can be found [in this link] (https://www.icloud.com/keynote/0Z_tcX5NElsNKIDL3gs0llnUQ#Post-GWAS-MR) Read more →

Lecture 6

2021-04-13 Haky Im
𝔽ind the class notes here […] Notice that, under the null hypothesis, the estimated effect size divided by the standard error behaves like a normal(0,1) random variable when the sample size is large enough: […] \[ Z = \frac{\hat\beta}{\text{se}(\hat\beta)}\] \[Z \approx N(0,1) ~~~~~~ … Read more →