tutorial

LD Score Regression

2021-04-16 Yanyu Liang
\[ \newcommand{\E}{\text{E}} \] […] This is a minial tutorial on using ldsc for LDSC regression. Let’s start by reviewing what LDSC regression does and what kind of input files are required for a minimal LDSC regression analysis. Under polygenic model, B. K. Bulik-Sullivan et al. (2015) … Read more →

Plink Tutorial

2021-04-09 Laura Vairus, et al
𝔽or a more detailed tutorial for GWAS analysis check out “A tutorial on conducting genome‐wide association studies: Quality control and statistical analysis” by Mareen et al here. […] We will learn to run a GWAS using plink. This tutorial follows a plink tutorial you can find here […] … Read more →

R Markdown

2020-07-08
ℝ Markdown is a authoring framework that allows for reproducible documentation of data science within the context of R Studio. This is an introduction designed to teach you how to use R Markdown in a few minutes. Further info and some of the examples used below can be found here: … Read more →

R Basics

2020-07-05 Laura Vairus, others
𝕊wirl is a great and easy way to get you started with R. Install and open it by clicking the green arrow on the right. Install Swirl Package: install.packages("swirl") library("swirl") swirl() Once you enter your username, it prompts you to choose a course to install. Choose 1 … Read more →

Command Line Basics

2020-07-02 Laura Vairus
𝕙ttps://www.nature.com/articles/d41586-021-00263-0 […] In this tutorial, we will learn some basic Unix/Linux commands to perform tasks in the command line. The command line is an interface that allows you to store, manage, and process data. Terminal is an app that gives you access to the … Read more →