het <- read.table("R_check.het", head=TRUE) het$HET_RATE = (het$"N.NM." - het$"O.HOM.")/het$"N.NM." het_fail = subset(het, (het$HET_RATE < mean(het$HET_RATE)-3*sd(het$HET_RATE)) | (het$HET_RATE > mean(het$HET_RATE)+3*sd(het$HET_RATE))); het_fail$HET_DST = (het_fail$HET_RATE-mean(het$HET_RATE))/sd(het$HET_RATE); write.table(het_fail, "fail-het-qc.txt", row.names=FALSE)